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Core NGS Tools - Shared screen with speaker view
John Ludes-Meyers
30:06
going well. The scavenger hunt gave me a chuckle!
Brian Stokes
01:12:58
I think using command prompt worked for me on WIndows 10 using "scp"
Luke Hebert
01:16:57
Yeah, just made it work for regular command prompt on Windows10 for me too. Cool!
Rachael Cox
01:31:15
MultiQC really is a masterclass in bioinformatics software. It's my favorite too!
nazan aksan
01:32:07
If I am unable to see in WinSCP the multiqc directory is that because it was created under idev?
Rachael Cox
01:33:21
Hmm no, that shouldn't make a difference
nazan aksan
01:33:47
I see the files under directory with ls...
nazan aksan
01:33:58
maybe WinSCP needs to be refreshed
Audrey Kelly
01:33:59
You might need to hit the green circly arrows to update the listings
Rachael Cox
01:34:15
I'll try to log into WinSCP and see if I have the same issue
Audrey Kelly
01:34:33
I was having that issue, and if you just refresh, it shows them
nazan aksan
01:34:42
that worked Audrey! Thank you
Rachael Cox
01:34:47
Great :)
Audrey Kelly
01:34:48
:)
Audrey Kelly
01:36:08
"green circly arrows" is a very technical bioinformatics phrase... :P
nazan aksan
01:37:21
:)
Rachael Cox
01:37:26
I still refer to the tilde with it's technical name, "squiggly dude"
Audrey Kelly
01:37:39
XD
John Ludes-Meyers
01:51:01
-z
Luke Hebert
01:51:02
| gzip ?
Luke Hebert
01:51:18
I'm probably wrong, one sec...
John Ludes-Meyers
01:51:20
option
Juyeon Park
01:51:20
-z
Rachael Cox
01:51:44
Luke, that would have been my first instinct too!
Luke Hebert
01:52:13
Ha! Good to know it's built in πŸ‘
John Ludes-Meyers
01:55:51
ok
Rachael Cox
01:56:05
Be right back, going to start more coffee and grab a snack
Elsy Paez Crespo
02:08:47
Anna, can you share your screen, please!
Elsy Paez Crespo
02:09:13
Thanks! :)
John Ludes-Meyers
02:21:02
-e RATE, --error-rate=RATE
Luke Hebert
02:23:39
3?
John Ludes-Meyers
02:25:04
lower the percentage
Josh Everson
02:25:10
change from 0.1 to something lower
John Ludes-Meyers
02:27:23
can use the β€”no-indels option
Luke Hebert
02:30:06
thanks John! I'll look more at that flag :)
Elizabeth Osterndorff-Kahanek
02:32:33
single
Jessica Podnar
02:32:46
2M and 2M
Luke Hebert
02:34:21
wc
Christina Ortega
02:56:51
I apologize, a work issue came up and I am going to have to leave. I will be sure to watch the recording.
Miles Morgan
03:23:01
Will it send a partial output file if killed?
Rachael Cox
03:23:35
it depends! some programs will, and some programs won't
Luke Hebert
03:24:15
I imagine it would matter if the program has started writing a file yet or not?
Elizabeth Osterndorff-Kahanek
03:27:17
Do you get a notification if your job is killed?
Juyeon Park
03:27:20
I might have missed this but can I run the batch job using launcher_creator.py in POD?
John Ludes-Meyers
03:36:31
looks like it’s done
Josh Everson
03:41:29
ls
Josh Everson
03:41:42
wrong window :p
Brian Stokes
03:42:23
Thanks!
Luke Hebert
03:42:47
Thanks again Anna & Rachel πŸ‘
Elsy Paez Crespo
03:42:51
Thanks a lot! Bravo!!